PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0032s0350.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Dof
Protein Properties Length: 406aa    MW: 44630.7 Da    PI: 8.8217
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0032s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.2e-3949109262
                  zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                             +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++
  SapurV1A.0032s0350.1.p  49 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 109
                             7899******************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.2E-3351107IPR003851Zinc finger, Dof-type
ProDomPD0074789.0E-2852107IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.52553107IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105591IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MLANCEKMVV ISSTTNEWPH NQLDEKSLMA STSKLMERPS QEVLSQTQQQ QALKCPRCDS  60
SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRVKR PASAVEGASN  120
SVSSANPNPQ TPIDHISSTS NHINPLLYGL SSSNPSEMNL PFPGRFNSRM DSAVSGYHNL  180
QPQLNALALG FSSGIMSTND ANGFNPTKQI QDVVTSNSLL SSYSNLFGSS TTSTNTASPI  240
ASLLASSFNQ QNFTNGGIKE SKRAPNYFQN MTIPFEELQM NGNSESGIGI KGVKNDHDQN  300
RLNWNVPCQN QIEQVGFSDP SMYWSTTTSV GSWHDPANTS DLERISLNKG IRLVWKEITD  360
ERSLDQRDHV SSKISLLVLF SRLRNPICAE RNLGSSSLSS SSLSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1647380.0KT164738.1 Populus tomentosa clone Potom.011G26508 F-box family protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043409.10.0PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBLB9N3H40.0B9N3H4_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45223356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.18e-39Dof family protein